bioNMF Results


bioNMF 1.0 - Main Menu
Job's parameters:
Job's ID:NMF_example
Analysis type:Standard NMF
Data matrix has numeric column headers:No
Data matrix has numeric row labels:No
Transpose data matrix:No
Normalization method:Do not normalize
Method to make data positive:Exponential scalling
Minimum number of factors:3
Maximum number of factors:5
Number of runs per factorization:40
Number of iterations:2000
Stopping threshold:40
Save options:Combine matrices in a single file
NMF results:
Best rank of factorization:4
Best Run (0-based indexing):32
Explained Variance:83.7374

Input matrix V heatmap Input matrix V profile
 
Matrix W Matrix H
Matrix W (data with labels) Matrix H (data with labels)
Matrix W heatmap Matrix H heatmap
Matrix W profile Matrix H profile
Supplemental matrices:
Combined matrices W Combined matrices H
Combined matrices W (data with labels) Combined matrices H (data with labels)
Job's output-file (detailed information and timings)
bioNMF 1.0 - Main Menu