bioNMF Results

Job's parameters:
Job's ID:	NMF_example
Analysis method:	Standard NMF
Input file format:	ASCII-text
Data matrix has numeric column-headers:	No
Data matrix has numeric row-labels:	No
Transpose data matrix:	No
Normalization method:	Do not normalize
Method to make data positive:	Exponential scaling
Initial values of output matrices W and H:	Selected randomly
NMF algorithm:	Standard NMF
Range of factorization ranks:	[2...5]
Number of runs per rank:	5
Number of iterations per run:	2000
Stopping threshold:	40 iteration(s)
Save option:	Save all matrices

NMF results:
Best factorization rank:	4
Best run (0-based indexing):	0
Distance between input matrix and W*H:	1.2872122e-05

Cophenetic Correlation Coefficient(s)

Heatmap of input matrix	Profile plot of input matrix
Matrix W	Matrix H
Matrix W (numeric data)	Matrix H (numeric data)
Heatmap of matrix W	Heatmap of matrix H
Profile plot of matrix W	Profile plot of matrix H

Supplemental matrices:
Run 0:	Matrix W Matrix W (numeric data)	Matrix H Matrix H (numeric data)
Run 1:	Matrix W Matrix W (numeric data)	Matrix H Matrix H (numeric data)
Run 2:	Matrix W Matrix W (numeric data)	Matrix H Matrix H (numeric data)
Run 3:	Matrix W Matrix W (numeric data)	Matrix H Matrix H (numeric data)
Run 4:	Matrix W Matrix W (numeric data)	Matrix H Matrix H (numeric data)

Output log (detailed information and timings).

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